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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37670752_37671405_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37670752 - 37671405
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
TTCTCTTTCAAG
Flanking Amino Acid:
LCPDDSASYQAFQRKLNSVA
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
80.3
0.68
1
79.3
33
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
54
-0
2
63.96
44.2

Associated Gene:

Gene:
PARP9
Ensembl Gene ID:
ENSAPLG00000010291
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010725
37664735 - 37675436
10702