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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37671932_37672643_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37671932 - 37672643
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AAACTTTGAACT
Flanking Amino Acid:
ILKGHIEEQETGAIVSSVSS
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
54.2
0.21
1.4
66.85
37.1

Associated Gene:

Gene:
PARP9
Ensembl Gene ID:
ENSAPLG00000010291
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010725
37664735 - 37675436
10702