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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37676291_37677226_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37676291 - 37677226
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AAAAAAATAATG
Flanking Amino Acid:
DTAAETVTKKIFLTVSAILN
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
79.5
0.66
0.8
77.7
31.2
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
39.6
-0.9
1.9
40.7
36

Associated Gene:

Gene:
DTX3L
Ensembl Gene ID:
ENSAPLG00000031101
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020405
37675763 - 37682754
6992