About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37685597_37685675_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
37685597 - 37685675

Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGAGGAGG

5'SS Class:
strong_major

3'SS Sequence:
GTTCCGCCTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CCTTAAC

U12 Branch Point Sequence:
CCCCCCTTAACC

Flanking Amino Acid:
EPPVDGDLLQEPGPAEEPAR

Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
84.2
0.81
0.9
69.5
42.7

Major BPS
64.7
0.37
1.1
67.2
35.2

Major PPT
73.8
0.54
0.9
66.1
35.8

Minor 5ss
26.2
-2.7
2.9
30.6
42.9

Minor BPS
69.2
0.59
1.4
67.59
44.2

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37685221 - 37702772
17552

37685221 - 37702772
17552