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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37685722_37686128_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37685722 - 37686128
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTCTATTT
Flanking Amino Acid:
EEPARRAAGGVNEPCASLPT
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.65
0.8
71.3
39.5
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
54.8
0.23
1.9
77.33
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010410
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044408
37685221 - 37702772
17552
ENSAPLT00000010864
37685221 - 37702772
17552