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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37686204_37686698_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37686204 - 37686698
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGATCTTTCATT
Flanking Amino Acid:
ASVCLQQEKTETRENLEAET
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.5
0.75
0.7
82.2
28.1
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
61.9
0.46
1.7
77.22
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010410
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044408
37685221 - 37702772
17552