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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37686204_37687847_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
37686204 - 37687847
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CATGTGGAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CCATGTGGAACT
Flanking Amino Acid:
ASVCLQQEKTDAQEVLQREH
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
49.5
-0
1.1
40.6
42.8
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
41
-0.6
2.3
56.66
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010410
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010864
37685221 - 37702772
17552