About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37694931_37695926_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37694931 - 37695926
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TTGATCGTAATT
Flanking Amino Acid:
LHPKDKENIQEFSNEYENRY
Intron Amino Acid Position:
1219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
69
0.47
1
69.9
32.6
Major PPT
84.3
0.77
0.7
77.7
31.1
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
54.8
0.23
2
75.74
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010410
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044408
37685221 - 37702772
17552
ENSAPLT00000010864
37685221 - 37702772
17552