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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37699671_37700708_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37699671 - 37700708
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTTGGGTAATT
Flanking Amino Acid:
KSIIRIDKSEDQETTVLPET
Intron Amino Acid Position:
1639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
83.7
0.76
0.8
77.8
31
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
44.4
-0.3
2.8
73.58
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010410
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010864
37685221 - 37702772
17552
ENSAPLT00000044408
37685221 - 37702772
17552