About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37705338_37705728_R


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
37705338 - 37705728

Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACCAGCC

5'SS Class:
major

3'SS Sequence:
CTCTTTCCTACAG|T

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CAAGCAT

U12 Branch Point Sequence:
TCTTTCCTACAG

Flanking Amino Acid:
QDGATTISNISRCWHCGESL

Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
66.8
0.4
1.2
58.3
42

Major BPS
47.3
-0.1
1.4
55.4
40.3

Major PPT
85.4
0.8
0.7
79.9
25.7

Minor 5ss
36.2
-1.6
3.5
51.7
45

Minor BPS
46.4
-0.4
2.1
56.57
44.8

Associated Gene:

Gene:
ANKZF1

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37705090 - 37710587
5498