About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37707487_37707689_R


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
37707487 - 37707689

Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCG|GTGAGTTGA

5'SS Class:
strong_major

3'SS Sequence:
TCACCTTCCTCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTCAC

U12 Branch Point Sequence:
TGTCCTTTCACC

Flanking Amino Acid:
GADPLQKDASAPEDEEEEEE

Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82
0.75
0.9
71.4
36.8

Major BPS
77.7
0.69
1
81
30.2

Major PPT
75.1
0.56
0.8
72.9
31.6

Minor 5ss
34.6
-1.8
2.8
40.9
45.4

Minor BPS
61.9
0.36
1.8
72.5
38.5

Associated Gene:

Gene:
ANKZF1

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37704849 - 37710587
5739

37705090 - 37710587
5498