About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37710137_37710232_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
37710137 - 37710232

Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTGAGTGGG

5'SS Class:
major

3'SS Sequence:
GTGCTTCTTTCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TGCACAG

U12 Branch Point Sequence:
CCCCCCTGCACA

Flanking Amino Acid:
LVTRFALAGDGQAAASPGQE

Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.7
0.7
1
63.5
42.9

Major BPS
45.5
-0.2
1.5
54.7
43.1

Major PPT
80.3
0.68
0.9
77.2
37.1

Minor 5ss
27.1
-2.6
3
31.9
42.5

Minor BPS
46.5
-0.2
1.9
53.11
45.1

Associated Gene:

Gene:
ANKZF1

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37704849 - 37710587
5739

37705090 - 37710587
5498