Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37710689_37710975_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

37710689 - 37710975

Intron Length:

287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGCCGG

5'SS Class:

weak_major

3'SS Sequence:

TCTCTCCCTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TGCTTGTTCACC

Flanking Amino Acid:

LLVHVPEGAKSPWHHIENLD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.4

0.22

1.2

43.5

45.5

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

84.1

0.77

0.7

81.4

23.7

Minor 5ss

33.8

-1.8

3.1

39.4

45.9

Minor BPS

46.9

-0.2

2.4

61.92

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010993

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011436

37710586 - 37716784

6199