Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37711336_37711605_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37711336 - 37711605

Intron Length:

270

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CCTTTCTTCACA

Flanking Amino Acid:

CMLIGEIFELMQFIFVVAFT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

77.1

31.3

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

84.1

0.77

0.7

26.6

Minor 5ss

35.4

-1.7

3.2

46.1

42.2

Minor BPS

62.4

0.38

1.8

70.02

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010993

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011436

37710586 - 37716784

6199