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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37712009_37712931_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37712009 - 37712931
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CTGCCCCTAACC
Flanking Amino Acid:
FYINALRIPMSNLPYYTWQE
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
83.5
0.75
0.7
77
25.2
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
59.9
0.29
1.8
68.8
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011436
37710586 - 37716784
6199