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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37714158_37714337_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37714158 - 37714337
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
TCTTTGTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCGCGCTGAGCC
Flanking Amino Acid:
EFAQLFQYKAVFILEELLSP
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
60
46.2
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
77.2
0.61
0.9
76.2
37.8
Minor 5ss
36.5
-1.5
3.2
48.4
47.2
Minor BPS
43.6
-0.5
2
52.56
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011436
37710586 - 37716784
6199