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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37714518_37715079_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37714518 - 37715079
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTCCC
5'SS Class:
major
3'SS Sequence:
CTGTGCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCCTCTTTATCT
Flanking Amino Acid:
MDVRQHGHPAWMSAGKTEAS
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
61.6
41.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
71.7
0.49
0.9
65.4
36.1
Minor 5ss
34.6
-1.8
3.1
46
42.2
Minor BPS
60.2
0.4
1.7
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011436
37710586 - 37716784
6199