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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37715755_37715919_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37715755 - 37715919
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TTTCCCGTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
CAAACCTCACTC
Flanking Amino Acid:
PRGASAMTASGADARTVSSG
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
39.1
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
72.8
0.51
1
69.2
36.9
Minor 5ss
29.1
-2.4
3.4
30.5
42.8
Minor BPS
45
-0.4
1.8
49.45
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011436
37710586 - 37716784
6199