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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37716697_37716778_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37716697 - 37716778
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGTG
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCACAT
U12 Branch Point Sequence:
AGGGCCACATCC
Flanking Amino Acid:
EDELPPQIHKV*
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.1
40.5
Major BPS
48.9
-0
1.2
56.9
40.5
Major PPT
82.2
0.72
0.8
76.3
32.3
Minor 5ss
31.4
-2.1
3.9
45.4
49.7
Minor BPS
40.3
-0.7
2
46.89
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010993
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011436
37710586 - 37716784
6199