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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37720339_37720412_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37720339 - 37720412
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCGCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TGCTTGGTGACC
Flanking Amino Acid:
EEERDVENSQPLLQDAGRSS
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
67.7
0.4
0.9
58
38.5
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
42.7
-0.5
2.5
57.27
42.2

Associated Gene:

Gene:
ABCB6
Ensembl Gene ID:
ENSAPLG00000011094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011575
37719586 - 37725721
6136