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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37720975_37721057_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37720975 - 37721057
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
CCATCCCCACCC
Flanking Amino Acid:
GLKFLQGGGAGSTGFVSNLR
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
72.9
36.6
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
74.9
0.56
0.7
68.2
25.3
Minor 5ss
35.2
-1.7
2.9
46.3
41.5
Minor BPS
43.3
-0.5
2.1
51.97
44.9

Associated Gene:

Gene:
ABCB6
Ensembl Gene ID:
ENSAPLG00000011094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011575
37719586 - 37725721
6136