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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37721802_37721896_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37721802 - 37721896
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TCGCCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
GCTCACGGAGCA
Flanking Amino Acid:
RFNEAIVKYQLSEWKVSASL
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.5
41.1
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
78.8
0.65
0.8
72.7
32
Minor 5ss
37
-1.5
3.6
55.4
48.8
Minor BPS
37.7
-0.9
2.2
47.78
41.7

Associated Gene:

Gene:
ABCB6
Ensembl Gene ID:
ENSAPLG00000011094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011575
37719586 - 37725721
6136