About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37723180_37723325_F


Intron Information:

Intron Rank:
15

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
37723180 - 37723325

Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTGAGACCC

5'SS Class:
major

3'SS Sequence:
CTTGTGCCCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GGTTTAT

U12 Branch Point Sequence:
CATGGTTTATTT

Flanking Amino Acid:
IHDRILSFPDGYSTQVGERG

Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.4
0.6
1
59.9
39.3

Major BPS
63.5
0.34
1.4
57.4
49.1

Major PPT
72.3
0.5
0.9
65.6
36.1

Minor 5ss
28.3
-2.5
3
36.1
40.2

Minor BPS
44.9
-0.3
2
59.84
44.7

Associated Gene:

Gene:
ABCB6

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37719586 - 37725721
6136