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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37723439_37723918_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37723439 - 37723918
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TACCCCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCATTTTTACCC
Flanking Amino Acid:
KGPRIILLDEALHRGGRRPD
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
68.8
0.42
0.8
61.3
28.8
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
52
0.04
1.6
57.59
42

Associated Gene:

Gene:
ABCB6
Ensembl Gene ID:
ENSAPLG00000011094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011575
37719586 - 37725721
6136