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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37723988_37724089_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37723988 - 37724089
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
TGGCTCAGGAGC
Flanking Amino Acid:
QGRAHCRAREARGAAAEGRR
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
73.1
0.52
0.9
66.4
35.7
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
38.9
-0.8
1.8
45.17
36.8

Associated Gene:

Gene:
ABCB6
Ensembl Gene ID:
ENSAPLG00000011094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011575
37719586 - 37725721
6136