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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37725879_37725966_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37725879 - 37725966
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTCCTGCTGACA
Flanking Amino Acid:
PPAAVLQNGLSEEEALQRAL
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
82.5
0.73
0.9
80.2
37.3
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
43.9
-0.4
2.3
60
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021109
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042189
37724737 - 37727524
2788