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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37726221_37726458_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37726221 - 37726458
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
CCGTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GCTCACGGACCC
Flanking Amino Acid:
SGAGHSLSKAGHAALARAQA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.4
41.8
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
65
0.34
0.9
57
38.7
Minor 5ss
23.7
-3
3.2
21.5
37.3
Minor BPS
37.1
-1
2.2
46.44
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021109
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042189
37724737 - 37727524
2788