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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37729561_37729966_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37729561 - 37729966
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGAT
5'SS Class:
major
3'SS Sequence:
CGCTGCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CGTGCCTTAATG
Flanking Amino Acid:
TTPQLTDVSEDLDQQSLHSE
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.4
32.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
72
0.5
0.9
61.3
40.1
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
65.6
0.35
1.6
63.65
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042418
37728824 - 37738780
9957
ENSAPLT00000041033
37728824 - 37739697
10874
ENSAPLT00000012595
37728824 - 37738801
9978