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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37733619_37737800_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
37733619 - 37737800
Intron Length:
4182

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAACAAGA
5'SS Class:
major
3'SS Sequence:
TGTCTCTAGCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
CTGTCTCTAGCG
Flanking Amino Acid:
SGSLPTSGTKGVTSGAQPHL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
62
42.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
48.5
-0
1.8
54.7
45
Minor 5ss
29.8
-2.3
3.9
40.2
39.9
Minor BPS
47.7
-0.3
2
55.54
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041033
37728824 - 37739697
10874