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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37737827_37738320_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37737827 - 37738320
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCGGGCTTATCT
Flanking Amino Acid:
WKPRFLFDFSGSLPTSGTKG
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.2
39.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
69
0.43
1
67.7
36.7
Minor 5ss
29.2
-2.4
2.9
36.2
40.8
Minor BPS
48.4
-0
2.1
66.94
49.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041033
37728824 - 37739697
10874