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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37747056_37747327_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37747056 - 37747327
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTGTCCCCACAG
Flanking Amino Acid:
LQKKYVSHVSREACISPCSM
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.2
40.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
75.7
0.58
0.8
69
31.6
Minor 5ss
34.3
-1.8
3
44.9
42.8
Minor BPS
43
-0.6
2.2
53.78
46.5

Associated Gene:

Gene:
CNPPD1
Ensembl Gene ID:
ENSAPLG00000023186
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046368
37745211 - 37748935
3725