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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37747853_37748048_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37747853 - 37748048
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCGCAT
U12 Branch Point Sequence:
CGTGCCGCATCC
Flanking Amino Acid:
LFEVLSWLEGRVAEKQGTWR
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
72.8
38.8
Major BPS
45.9
-0.2
1.5
53.3
44.2
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
35.4
-1.7
3.6
48.8
47.3
Minor BPS
40
-0.7
2.3
50.84
45.9

Associated Gene:

Gene:
CNPPD1
Ensembl Gene ID:
ENSAPLG00000023186
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046368
37745211 - 37748935
3725