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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37753338_37754900_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37753338 - 37754900
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGATCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
ACCTGTTTGATC
Flanking Amino Acid:
LSFFLENTVSDGGLRGAGEQ
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
79.7
0.67
0.9
73.6
36.7
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
48.5
-0.1
1.7
54.49
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021175
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033092
37751918 - 37756315
4398