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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3787282_3788851_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3787282 - 3788851
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TTTGCACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
GGPPAAAAAQKMYKHTGSSD
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.8
0.69
0.9
73.6
36
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
HIBCH
Ensembl Gene ID:
ENSAPLG00000012247
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038715
3787219 - 3826475
39257