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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3792731_3807002_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3792731 - 3807002
Intron Length:
14272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GCTCCATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTTTATAACC
Flanking Amino Acid:
ALIDGITMGGGVGLSVHGHF
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.2
0.43
1
62.3
37.8
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
61.5
0.34
1.5
70.55
34.1

Associated Gene:

Gene:
HIBCH
Ensembl Gene ID:
ENSAPLG00000012247
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012759
3787250 - 3826802
39553
ENSAPLT00000038715
3787219 - 3826475
39257
ENSAPLT00000036301
3787250 - 3826578
39329