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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37991050_38021229_R

Intron Information:

Intron Rank:
154455
Intron Class:
major
Intron Phase:
Intron Coordinates:
37991050 - 38021229
Intron Length:
30180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTTC
5'SS Class:
major
3'SS Sequence:
TCTTTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTCTTCTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
73.2
39.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.7
0.87
0.7
81.4
34.9
Minor 5ss
43.8
-0.7
2.9
59.3
45.4
Minor BPS
56.3
0.28
1.7
79.14
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030627
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036905
37989768 - 38021392
31625