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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_37991050_38027709_R

Intron Information:

Intron Rank:
154457
Intron Class:
major
Intron Phase:
Intron Coordinates:
37991050 - 38027709
Intron Length:
36660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCCT
5'SS Class:
major
3'SS Sequence:
TCTTTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTCTTCTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
68.7
42.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.7
0.87
0.7
81.4
34.9
Minor 5ss
39.9
-1.1
3.2
57.5
46.7
Minor BPS
56.3
0.28
1.7
79.14
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030627
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044099
37989768 - 38068750
78983