About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3807082_3807572_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3807082 - 3807572
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTAATA
Flanking Amino Acid:
TLFAMPETAIAICTLHFLMF
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.67
0.9
77.6
35.5
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
76.4
0.82
1
79.24
30.7

Associated Gene:

Gene:
HIBCH
Ensembl Gene ID:
ENSAPLG00000012247
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036301
3787250 - 3826578
39329