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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3812945_3814555_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3812945 - 3814555
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
GCTTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGCTTTTTAAAT
Flanking Amino Acid:
ADLLNSYHVKSKIDQEKEFV
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.1
0.43
1
66.4
38.7
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
66.8
0.6
1.4
77.19
39.4

Associated Gene:

Gene:
HIBCH
Ensembl Gene ID:
ENSAPLG00000012247
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038715
3787219 - 3826475
39257
ENSAPLT00000036301
3787250 - 3826578
39329
ENSAPLT00000012759
3787250 - 3826802
39553