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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38143941_38144334_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38143941 - 38144334
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
ATATTCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTTGTCATATTC
Flanking Amino Acid:
LELFVLRLAYRSNPVEGKLI
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
79.9
0.67
0.9
70.7
40.3
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
46.4
-0.2
1.9
59.26
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019403
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020461
38142869 - 38144902
2034