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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3815606_3820154_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3815606 - 3820154
Intron Length:
4549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
ATGTCTTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TAATTGTTAATG
Flanking Amino Acid:
GSPFAIKQLETINKMSPTSL
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
78.9
0.65
0.9
70.3
40.7
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
53.2
-0
2.1
60.77
41.5

Associated Gene:

Gene:
HIBCH
Ensembl Gene ID:
ENSAPLG00000012247
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012759
3787250 - 3826802
39553
ENSAPLT00000038715
3787219 - 3826475
39257
ENSAPLT00000036301
3787250 - 3826578
39329