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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38165414_38175561_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
38165414 - 38175561
Intron Length:
10148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTGGCT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAATTTTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.3
55.4
41.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.4
0.95
0.6
87.6
22.8
Minor 5ss
26.9
-2.7
3.6
39.8
45.8
Minor BPS
63.6
0.51
1.5
77.42
39.1

Associated Gene:

Gene:
GPD2
Ensembl Gene ID:
ENSAPLG00000010646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011123
38165344 - 38219307
53964