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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38183281_38186807_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38183281 - 38186807
Intron Length:
3527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TTTCTGGTAACA
Flanking Amino Acid:
CGCALDAVTRGLKTALLERD
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
64.8
0.33
1
58
41.2
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
47.9
-0.1
2.6
72.02
40.3

Associated Gene:

Gene:
GPD2
Ensembl Gene ID:
ENSAPLG00000010646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011123
38165344 - 38219307
53964
ENSAPLT00000042166
38165344 - 38219307
53964
ENSAPLT00000041219
38166365 - 38219307
52943
ENSAPLT00000030799
38181371 - 38219307
37937