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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38188068_38189117_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38188068 - 38189117
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CATTTCTTATTT
Flanking Amino Acid:
APLPIMLPVYKWWQLPYYWV
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
63.7
0.51
1.6
76.26
41

Associated Gene:

Gene:
GPD2
Ensembl Gene ID:
ENSAPLG00000010646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011123
38165344 - 38219307
53964
ENSAPLT00000042166
38165344 - 38219307
53964
ENSAPLT00000041219
38166365 - 38219307
52943
ENSAPLT00000030799
38181371 - 38219307
37937