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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38209648_38212065_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38209648 - 38212065
Intron Length:
2418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCT
5'SS Class:
major
3'SS Sequence:
TTCCTCTGGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGTTCATGACT
Flanking Amino Acid:
VRNYLSVDVEVRRGDVLAAW
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67
44.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
70.5
0.46
1
67.9
37.7
Minor 5ss
32
-2.1
3.6
47.9
47.8
Minor BPS
59.1
0.37
1.7
75.3
41.8

Associated Gene:

Gene:
GPD2
Ensembl Gene ID:
ENSAPLG00000010646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041219
38166365 - 38219307
52943
ENSAPLT00000030799
38181371 - 38219307
37937
ENSAPLT00000011123
38165344 - 38219307
53964
ENSAPLT00000042166
38165344 - 38219307
53964