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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38212618_38213220_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38212618 - 38213220
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AATTTTTCAATT
Flanking Amino Acid:
LVQDYGLESEVAQHLASTYG
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.7
0.56
0.9
68.5
37
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
61.9
0.45
1.4
75.25
35.6

Associated Gene:

Gene:
GPD2
Ensembl Gene ID:
ENSAPLG00000010646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011123
38165344 - 38219307
53964
ENSAPLT00000042166
38165344 - 38219307
53964
ENSAPLT00000041219
38166365 - 38219307
52943
ENSAPLT00000030799
38181371 - 38219307
37937