Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3821470_3826359_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3821470 - 3826359

Intron Length:

4890

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAACA

5'SS Class:

strong_major

3'SS Sequence:

GCCCACCTGACAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GTGTTTTTATGC

Flanking Amino Acid:

GHDFYEGVRAVLIDKDQSPR

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.8

83.4

27.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

59.5

0.22

52.8

36.5

Minor 5ss

33.8

-1.9

2.9

41.4

44.7

Minor BPS

48.1

-0.1

1.8

57.76

41.7

Associated Gene:

Gene:

HIBCH

Ensembl Gene ID:

ENSAPLG00000012247

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038715

3787219 - 3826475

39257

ENSAPLT00000036301

3787250 - 3826578

39329

ENSAPLT00000012759

3787250 - 3826802

39553