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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38215388_38215472_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38215388 - 38215472
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CGTTATCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TAATCGTTATCT
Flanking Amino Acid:
EITLVPSDIERYKKRFHMFD
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
79.9
0.67
0.9
73.2
36.9
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
55.5
0.25
2.3
78.2
43.7

Associated Gene:

Gene:
GPD2
Ensembl Gene ID:
ENSAPLG00000010646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011123
38165344 - 38219307
53964
ENSAPLT00000042166
38165344 - 38219307
53964
ENSAPLT00000041219
38166365 - 38219307
52943
ENSAPLT00000030799
38181371 - 38219307
37937