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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38215552_38215678_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38215552 - 38215678
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTTTTTGACT
Flanking Amino Acid:
TILDVQRVLESISVQIDEKT
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
77.8
0.63
0.9
74.6
40
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
82
1.09
0.9
94.3
25.7

Associated Gene:

Gene:
GPD2
Ensembl Gene ID:
ENSAPLG00000010646
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042166
38165344 - 38219307
53964
ENSAPLT00000030799
38181371 - 38219307
37937
ENSAPLT00000011123
38165344 - 38219307
53964