Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38354896_38355389_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38354896 - 38355389

Intron Length:

494

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGATA

5'SS Class:

strong_major

3'SS Sequence:

ATCCCTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAT

U12 Branch Point Sequence:

ATCCCTCCCACA

Flanking Amino Acid:

AFQTCDVNNEDQKFNYTWLR

Intron Amino Acid Position:

784

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.7

1.01

0.8

87.8

27.9

Major BPS

49.9

-0

1.4

61.8

44.5

Major PPT

71.9

0.49

0.8

65.1

Minor 5ss

35.8

-1.6

3.3

48.1

47.6

Minor BPS

40.6

-0.7

2.1

52.03

39.8

Associated Gene:

Gene:

GALNT5

Ensembl Gene ID:

ENSAPLG00000010565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043060

38344894 - 38355719

10826

ENSAPLT00000010988

38344894 - 38357469

12576